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The congenital absence of a patent anus at birth is rather uncommon in swine. The cause is not known but may have a genetic component or may be from an insult to the fetus in critical  developmental stages in utero. The resultant megacolon may not be clinically apparent until several weeks of age.

From https://webhost-dev.cvm.iastate.edu/vdpam/about/focus-areas/swine/swine-disease-manual/index-of-diseases/atresia-ani